PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_001315-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MYB

Protein Properties

Length: 1179aa MW: 131685 Da PI: 8.0976

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_001315-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.2	1.8e-08	771	812	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+e+ +++d + +G++ +++Ia+ + +t +c+++++k AHYPO_001315-RA 771 SWTAEDKRIFIDKLAIHGKD-FRKIASFFD-QKTTADCVEFYYK 812 7***************99.*****.9********98 PP
2	Myb_DNA-binding	26.4	1.6e-08	940	981	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E l+v+a+ +G++ +++I++++ +++ qck ++ k+ AHYPO_001315-RA 940 WTDNEKSLFVQAFSSHGKD-FSLISQCVK-TKSIDQCKVFFSKV 981 ***************99.****9.******998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.24E-13	755	816	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-4	766	812	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.514	767	818	IPR017884	SANT domain
SMART	SM00717	3.7E-7	768	816	IPR001005	SANT/Myb domain
Pfam	PF00249	5.5E-6	771	812	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	10.863	935	986	IPR017884	SANT domain
SMART	SM00717	1.6E-5	936	984	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.18E-10	938	986	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-7	940	980	IPR001005	SANT/Myb domain
CDD	cd00167	2.51E-4	940	981	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1179 aa Download sequence Send to blast
MPPAPLSCDR NHLFRDRISS SRWRDSSSYY VGSRNFNNDN DFSPRWGFPS SHFHCAPGHV 60 KQGGWHMNYE DHEHSTHSFG DRFMDDDVFR PYGMHGDGRY VKFYRDNRPF YSHKNRRDHS 120 WEANHHHHRS PSNGGGRPRI VNDKRLISDS FMRISHMRSD PCDQFQKREQ TDKPSDANGS 180 SMGHKVDKKN LMGSYEWKPL KKSRSRSLTS RGSFFSHTSS SKGIKGESCD LPPKNATPVR 240 STSGDDVPCV ATVAPSEEPS SKKPRLGWGQ GLAKYEKKKV EGPEENVNKD GNAVLVTNVE 300 HLHSFTSNLV AKSPKVKDFS NCSSPATPSS FTCSSLPGLE DNSYGKAIDF DGNTTKFSVS 360 STSVPGSQLD GSNFSLDTME LNSITNLGSM LTELLQEDYK SSMDTSFTRS SALNRLLLWK 420 DDIAKALKLT ETEIESLENE LASLQANTSK SLQLPALSDS GLSDGVNVLH VPQLLVSNGD 480 IILENRLPCD EAKGVKVDVR DEDIDSPGTA TSKFVDPPVQ KFVSLELHKT SVETSTKSTM 540 ENLVACEDES DVGTSCQSCD KKVILDSDAI SGIVQPNVCE KEEGNLCDIV LASNKETADR 600 AAEFVLKLLP SCDYSLKPNG VYCLPAADTT VKKKFLNRKR FLRFKERVIS SKYRILHNLW 660 KEDLHLRSLK SYHGKPHKKL DLSSRSRQIR SHKHRSSTRS PAGSLSLVPT PGIIDFTGKL 720 ISDSKVKVYR NSLKMPAMIL DEKEKMSRIL LSNGLVEDPC AVEKERSLVN SWTAEDKRIF 780 IDKLAIHGKD FRKIASFFDQ KTTADCVEFY YKNHKLECFK KIKKLKGKNL GKPLSSSTYL 840 VTSEKKWSRE MNASSLDILG AASVIAAQAE QALETPKSLL RKPSHRKSNG LDGIKDASNQ 900 DWKQQKTGIK IKWRWTPEVT QNVDDSCSDE GCGEWDPADW TDNEKSLFVQ AFSSHGKDFS 960 LISQCVKTKS IDQCKVFFSK VRKCLGLDTI LFASGIGEIH SNNGTNRTGT NNEDAGIAET 1020 DSVFCTDKSG CRIDEDLLRV NSDVSMPEAY PELEENCGLG QLDHKYGCLE DDDLLPNADF 1080 PDVSDPRMFQ LVIMAFGMEP RYRQTFQHCQ IQLLLMAKYP TAFANHPISL RKLKQQSVQV 1140 TAMRNGNDCN MNSARVFSPR ESSSSNGSVV DYRSSARA*

Sequence ? help Back to Top

Protein Sequence Length: 1179 aa Download sequence Send to blast

MPPAPLSCDR NHLFRDRISS SRWRDSSSYY VGSRNFNNDN DFSPRWGFPS SHFHCAPGHV  60
KQGGWHMNYE DHEHSTHSFG DRFMDDDVFR PYGMHGDGRY VKFYRDNRPF YSHKNRRDHS  120
WEANHHHHRS PSNGGGRPRI VNDKRLISDS FMRISHMRSD PCDQFQKREQ TDKPSDANGS  180
SMGHKVDKKN LMGSYEWKPL KKSRSRSLTS RGSFFSHTSS SKGIKGESCD LPPKNATPVR  240
STSGDDVPCV ATVAPSEEPS SKKPRLGWGQ GLAKYEKKKV EGPEENVNKD GNAVLVTNVE  300
HLHSFTSNLV AKSPKVKDFS NCSSPATPSS FTCSSLPGLE DNSYGKAIDF DGNTTKFSVS  360
STSVPGSQLD GSNFSLDTME LNSITNLGSM LTELLQEDYK SSMDTSFTRS SALNRLLLWK  420
DDIAKALKLT ETEIESLENE LASLQANTSK SLQLPALSDS GLSDGVNVLH VPQLLVSNGD  480
IILENRLPCD EAKGVKVDVR DEDIDSPGTA TSKFVDPPVQ KFVSLELHKT SVETSTKSTM  540
ENLVACEDES DVGTSCQSCD KKVILDSDAI SGIVQPNVCE KEEGNLCDIV LASNKETADR  600
AAEFVLKLLP SCDYSLKPNG VYCLPAADTT VKKKFLNRKR FLRFKERVIS SKYRILHNLW  660
KEDLHLRSLK SYHGKPHKKL DLSSRSRQIR SHKHRSSTRS PAGSLSLVPT PGIIDFTGKL  720
ISDSKVKVYR NSLKMPAMIL DEKEKMSRIL LSNGLVEDPC AVEKERSLVN SWTAEDKRIF  780
IDKLAIHGKD FRKIASFFDQ KTTADCVEFY YKNHKLECFK KIKKLKGKNL GKPLSSSTYL  840
VTSEKKWSRE MNASSLDILG AASVIAAQAE QALETPKSLL RKPSHRKSNG LDGIKDASNQ  900
DWKQQKTGIK IKWRWTPEVT QNVDDSCSDE GCGEWDPADW TDNEKSLFVQ AFSSHGKDFS  960
LISQCVKTKS IDQCKVFFSK VRKCLGLDTI LFASGIGEIH SNNGTNRTGT NNEDAGIAET  1020
DSVFCTDKSG CRIDEDLLRV NSDVSMPEAY PELEENCGLG QLDHKYGCLE DDDLLPNADF  1080
PDVSDPRMFQ LVIMAFGMEP RYRQTFQHCQ IQLLLMAKYP TAFANHPISL RKLKQQSVQV  1140
TAMRNGNDCN MNSARVFSPR ESSSSNGSVV DYRSSARA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_D	8e-15	735	820	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_C	8e-15	735	820	9	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010669645.1	0.0	PREDICTED: uncharacterized protein LOC104886820
TrEMBL	A0A0K9QWA8	0.0	A0A0K9QWA8_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	2e-86	MYB family protein

Link Out ? help Back to Top
Phytozome	AHYPO_001315-RA